HL_2ZJR_045

3D structure

PDB id

2ZJR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Refined native structure of the large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.91 Å

Loop

Sequence

GUUUACCAAAAUC

Length

13 nucleotides

Bulged bases

2ZJR|1|X|A|1771, 2ZJR|1|X|C|1772, 2ZJR|1|X|C|1773, 2ZJR|1|X|A|1777

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61061.1

Basepair signature

cWW-cWW-tWH-tHH-R

Number of instances in this motif group

1

Unit IDs

2ZJR|1|X|G|1767
2ZJR|1|X|U|1768
2ZJR|1|X|U|1769
2ZJR|1|X|U|1770
2ZJR|1|X|A|1771
2ZJR|1|X|C|1772
2ZJR|1|X|C|1773
2ZJR|1|X|A|1774
2ZJR|1|X|A|1775
2ZJR|1|X|A|1776
2ZJR|1|X|A|1777
2ZJR|1|X|U|1778
2ZJR|1|X|C|1779

Current chains

Chain X

ribosomal 23S RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain A

50S ribosomal protein L2