HL_2ZM5_006

3D structure

PDB id

2ZM5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe)

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GUUCGAUUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2ZM5_006 not in the Motif Atlas

Homologous match to HL_5E6M_003

Geometric discrepancy: 0.1739

The information below is about HL_5E6M_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

96

Unit IDs

2ZM5|1|D|G|53
2ZM5|1|D|U|54
2ZM5|1|D|U|55
2ZM5|1|D|C|56
2ZM5|1|D|G|57
2ZM5|1|D|A|58
2ZM5|1|D|U|59
2ZM5|1|D|U|60
2ZM5|1|D|C|61

Current chains

Chain D

tRNA(Phe)

Nearby chains