3D structure

PDB id
2ZNI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Pyrrolysyl-tRNA synthetase-tRNA(Pyl) complex from Desulfitobacterium hafniense
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GUGAAACUC
Length
9 nucleotides
Bulged bases (A, C, G, U)
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
T-loop with 2 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_22280.5
Basepair signature
cWW-tWH-F-F-F-F-F
Number of instances in this motif group
71

Unit IDs

2ZNI|1|C|G|53
2ZNI|1|C|U|54
2ZNI|1|C|G|55
2ZNI|1|C|A|56
2ZNI|1|C|A|57
2ZNI|1|C|A|58
2ZNI|1|C|C|59
2ZNI|1|C|U|60
2ZNI|1|C|C|61

Current chains

Chain C
bacterial tRNA

Nearby chains

No other chains within 10Å

Coloring options:

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