HL_300D_002

3D structure

PDB id

300D (explore in PDB, NAKB, or RNA 3D Hub)

Description

CAPTURING THE STRUCTURE OF A CATALYTIC RNA INTERMEDIATE: RNA HAMMERHEAD RIBOZYME, MN(II)-SOAKED

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUCUG

Length

5 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_300D_002 not in the Motif Atlas

Geometric match to HL_4V9K_033

Geometric discrepancy: 0.2068

The information below is about HL_4V9K_033

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

300D|1|B|C|152
300D|1|B|U|153
300D|1|B|C|154
300D|1|B|U|161
300D|1|B|G|162

Current chains

Chain B

RNA HAMMERHEAD RIBOZYME

Nearby chains

Chain A

RNA HAMMERHEAD RIBOZYME