HL_30QZ_001
3D structure
- PDB id
- 30QZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S ribosome with peptidyl-tRNA and Hsp15
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.23 Å
Loop
- Sequence
- CAGUCGGUUAG
- Length
- 11 nucleotides
- Bulged bases
- 30QZ|1|Z|U|16, 30QZ|1|Z|G|18, 30QZ|1|Z|U|19, 30QZ|1|Z|U|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_30QZ_001 not in the Motif Atlas
- Homologous match to HL_5AXM_001
- Geometric discrepancy: 0.1984
- The information below is about HL_5AXM_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20490.1
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 13
Unit IDs
30QZ|1|Z|C|13
30QZ|1|Z|A|14
30QZ|1|Z|G|15
30QZ|1|Z|U|16
30QZ|1|Z|C|17
30QZ|1|Z|G|17|||A
30QZ|1|Z|G|18
30QZ|1|Z|U|19
30QZ|1|Z|U|20
30QZ|1|Z|A|21
30QZ|1|Z|G|22
Current chains
- Chain Z
- tRNA Asp
Nearby chains
- Chain V
- Heat shock protein 15
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain f
- Large ribosomal subunit protein uL5
Coloring options: