HL_30QZ_002

3D structure

PDB id

30QZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome with peptidyl-tRNA and Hsp15

Experimental method

ELECTRON MICROSCOPY

Resolution

2.23 Å

Loop

Sequence

CCUGUCACG

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_30QZ_002 not in the Motif Atlas

Homologous match to HL_2AZX_005

Geometric discrepancy: 0.2721

The information below is about HL_2AZX_005

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

51

Unit IDs

30QZ|1|Z|C|31
30QZ|1|Z|C|32
30QZ|1|Z|U|33
30QZ|1|Z|G|34
30QZ|1|Z|U|35
30QZ|1|Z|C|36
30QZ|1|Z|A|37
30QZ|1|Z|C|38
30QZ|1|Z|G|39

Current chains

Chain Z

tRNA Asp

Nearby chains

Chain V

Heat shock protein 15