HL_30RB_058

3D structure

PDB id

30RB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with peptidyl-tRNA and Hsp15

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

(PSU)GCUAACG

Length

8 nucleotides

Bulged bases

30RB|1|a|U|958, 30RB|1|a|C|961

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_30RB_058 not in the Motif Atlas

Homologous match to HL_7A0S_026

Geometric discrepancy: 0.1581

The information below is about HL_7A0S_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

30RB|1|a|PSU|955
30RB|1|a|G|956
30RB|1|a|C|957
30RB|1|a|U|958
30RB|1|a|A|959
30RB|1|a|A|960
30RB|1|a|C|961
30RB|1|a|G|962

Current chains

Chain a

23S rRNA

Nearby chains

Chain b

5S ribosomal RNA; 5S rRNA

Chain l

Large ribosomal subunit protein uL16