HL_3B4C_003

3D structure

PDB id

3B4C (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. tengcongensis glmS ribozyme bound to glucosamine-6-phosphate and a substrate RNA with a 2'5'-phosphodiester linkage

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UCUCCUGCGA

Length

10 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3B4C_003 not in the Motif Atlas

Geometric match to HL_2JLT_001

Geometric discrepancy: 0.39

The information below is about HL_2JLT_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_14856.1

Basepair signature

cWW-cWW-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

3B4C|1|B|U|77
3B4C|1|B|C|78
3B4C|1|B|U|80
3B4C|1|B|C|81
3B4C|1|B|C|82
3B4C|1|B|U|83
3B4C|1|B|G|84
3B4C|1|B|C|85
3B4C|1|B|G|86
3B4C|1|B|A|87

Current chains

Chain B

glmS ribozyme RNA

Nearby chains