HL_3B4C_004

3D structure

PDB id

3B4C (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. tengcongensis glmS ribozyme bound to glucosamine-6-phosphate and a substrate RNA with a 2'5'-phosphodiester linkage

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGCGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3B4C_004 not in the Motif Atlas

Homologous match to HL_2Z75_004

Geometric discrepancy: 0.0738

The information below is about HL_2Z75_004

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

3B4C|1|B|G|113
3B4C|1|B|G|114
3B4C|1|B|C|115
3B4C|1|B|G|116
3B4C|1|B|A|117
3B4C|1|B|C|118

Current chains

Chain B

glmS ribozyme RNA

Nearby chains

Chain A

glmS ribozyme substrate with a 2'5'-phosphodiester linkage