HL_3CC2_052

3D structure

PDB id

3CC2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution with rrnA Sequence for the 23S rRNA and Genome-derived Sequences for r-Proteins

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GUGCGGAGUC

Length

10 nucleotides

Bulged bases

3CC2|1|0|C|2071, 3CC2|1|0|G|2072, 3CC2|1|0|G|2073

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3CC2_052 not in the Motif Atlas

Homologous match to HL_4V9F_052

Geometric discrepancy: 0.0209

The information below is about HL_4V9F_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

3CC2|1|0|G|2068
3CC2|1|0|U|2069
3CC2|1|0|G|2070
3CC2|1|0|C|2071
3CC2|1|0|G|2072
3CC2|1|0|G|2073
3CC2|1|0|A|2074
3CC2|1|0|G|2075
3CC2|1|0|U|2076
3CC2|1|0|C|2077

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain B

50S ribosomal protein L3P

Chain Y

50S ribosomal protein L32e