3D structure

PDB id
3CC2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
The Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution with rrnA Sequence for the 23S rRNA and Genome-derived Sequences for r-Proteins
Experimental method
X-RAY DIFFRACTION
Resolution
2.4 Å

Loop

Sequence
GUACAAGAC
Length
9 nucleotides
Bulged bases
3CC2|1|0|U|2837
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_3CC2_069 not in the Motif Atlas
Homologous match to HL_4V9F_069
Geometric discrepancy: 0.0207
The information below is about HL_4V9F_069
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_64690.6
Basepair signature
cWW-cSW-F-F-F-F
Number of instances in this motif group
9

Unit IDs

3CC2|1|0|G|2836
3CC2|1|0|U|2837
3CC2|1|0|A|2838
3CC2|1|0|C|2839
3CC2|1|0|A|2840
3CC2|1|0|A|2841
3CC2|1|0|G|2842
3CC2|1|0|A|2843
3CC2|1|0|C|2844

Current chains

Chain 0
23S RIBOSOMAL RNA

Nearby chains

Chain B
50S ribosomal protein L3P
Chain R
50S ribosomal protein L22P
Chain X
50S ribosomal protein L31e

Coloring options:


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