HL_3CC4_056

3D structure

PDB id

3CC4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal Structure of Anisomycin Bound to the 50S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGAAAAGAUAUCG

Length

13 nucleotides

Bulged bases

3CC4|1|0|A|2302, 3CC4|1|0|C|2309

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3CC4_056 not in the Motif Atlas

Homologous match to HL_4V9F_056

Geometric discrepancy: 0.032

The information below is about HL_4V9F_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

3CC4|1|0|C|2298
3CC4|1|0|G|2299
3CC4|1|0|A|2300
3CC4|1|0|A|2301
3CC4|1|0|A|2302
3CC4|1|0|A|2303
3CC4|1|0|G|2304
3CC4|1|0|A|2305
3CC4|1|0|U|2306
3CC4|1|0|A|2307
3CC4|1|0|U|2308
3CC4|1|0|C|2309
3CC4|1|0|G|2310

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain 9

5S ribosomal RNA; 5S rRNA

Chain H

50S ribosomal protein L10e

Chain Q

50S ribosomal protein L21e