3D structure

PDB id
3CC4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Co-crystal Structure of Anisomycin Bound to the 50S Ribosomal Subunit
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
UACCCAUCCCGAACA
Length
15 nucleotides
Bulged bases
3CC4|1|9|C|40
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_3CC4_074 not in the Motif Atlas
Homologous match to HL_4V9F_074
Geometric discrepancy: 0.062
The information below is about HL_4V9F_074
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_97756.2
Basepair signature
cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F
Number of instances in this motif group
6

Unit IDs

3CC4|1|9|U|33
3CC4|1|9|A|34
3CC4|1|9|C|35
3CC4|1|9|C|36
3CC4|1|9|C|37
3CC4|1|9|A|38
3CC4|1|9|U|39
3CC4|1|9|C|40
3CC4|1|9|C|41
3CC4|1|9|C|42
3CC4|1|9|G|43
3CC4|1|9|A|44
3CC4|1|9|A|45
3CC4|1|9|C|46
3CC4|1|9|A|47

Current chains

Chain 9
5S ribosomal RNA

Nearby chains

Chain 0
Large subunit ribosomal RNA; LSU rRNA
Chain D
50S ribosomal protein L5P
Chain N
50S ribosomal protein L18P

Coloring options:


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