HL_3CCJ_030

3D structure

PDB id

3CCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation C2534U

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

3CCJ|1|0|A|1174

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3CCJ_030 not in the Motif Atlas

Geometric match to HL_3CUL_003

Geometric discrepancy: 0.3916

The information below is about HL_3CUL_003

Detailed Annotation

T-loop related

Broad Annotation

T-loop related

Motif group

HL_45359.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

3CCJ|1|0|C|1168
3CCJ|1|0|U|1169
3CCJ|1|0|U|1170
3CCJ|1|0|A|1171
3CCJ|1|0|G|1172
3CCJ|1|0|A|1173
3CCJ|1|0|A|1174
3CCJ|1|0|G|1175
3CCJ|1|0|C|1176
3CCJ|1|0|A|1177
3CCJ|1|0|G|1178

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain I

50S ribosomal protein L11P