HL_3CCJ_056

3D structure

PDB id

3CCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation C2534U

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAAAAGAUAUCG

Length

13 nucleotides

Bulged bases

3CCJ|1|0|A|2302, 3CCJ|1|0|C|2309

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3CCJ_056 not in the Motif Atlas

Homologous match to HL_4V9F_056

Geometric discrepancy: 0.0684

The information below is about HL_4V9F_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

3CCJ|1|0|C|2298
3CCJ|1|0|G|2299
3CCJ|1|0|A|2300
3CCJ|1|0|A|2301
3CCJ|1|0|A|2302
3CCJ|1|0|A|2303
3CCJ|1|0|G|2304
3CCJ|1|0|A|2305
3CCJ|1|0|U|2306
3CCJ|1|0|A|2307
3CCJ|1|0|U|2308
3CCJ|1|0|C|2309
3CCJ|1|0|G|2310

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 9

5S ribosomal RNA; 5S rRNA

Chain H

50S ribosomal protein L10e

Chain Q

50S ribosomal protein L21e