HL_3CCL_058

3D structure

PDB id

3CCL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation U2535C. Density for Anisomycin is visible but not included in model.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UGCAAGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3CCL_058 not in the Motif Atlas

Homologous match to HL_4V9F_058

Geometric discrepancy: 0.0522

The information below is about HL_4V9F_058

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

29

Unit IDs

3CCL|1|0|U|2358
3CCL|1|0|G|2359
3CCL|1|0|C|2360
3CCL|1|0|A|2361
3CCL|1|0|A|2362
3CCL|1|0|G|2363
3CCL|1|0|A|2364
3CCL|1|0|G|2365

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain H

50S ribosomal protein L10e

Chain N

50S ribosomal protein L18P

Chain Q

50S ribosomal protein L21e