HL_3CCQ_002
3D structure
- PDB id
- 3CCQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation A2488U
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CGCACGGAG
- Length
- 9 nucleotides
- Bulged bases
- 3CCQ|1|0|C|87
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3CCQ_002 not in the Motif Atlas
- Homologous match to HL_4V9F_002
- Geometric discrepancy: 0.0899
- The information below is about HL_4V9F_002
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.4
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 24
Unit IDs
3CCQ|1|0|C|83
3CCQ|1|0|G|84
3CCQ|1|0|C|85
3CCQ|1|0|A|86
3CCQ|1|0|C|87
3CCQ|1|0|G|88
3CCQ|1|0|G|89
3CCQ|1|0|A|90
3CCQ|1|0|G|91
Current chains
- Chain 0
- 23S RIBOSOMAL RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L39e
- Chain T
- 50S ribosomal protein L24P
- Chain V
- 50S ribosomal protein L29P
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