HL_3CCQ_025

3D structure

PDB id

3CCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation A2488U

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UGAAAGG

Length

7 nucleotides

Bulged bases

3CCQ|1|0|A|874, 3CCQ|1|0|G|877

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3CCQ_025 not in the Motif Atlas

Homologous match to HL_4V9F_025

Geometric discrepancy: 0.0475

The information below is about HL_4V9F_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87954.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

3CCQ|1|0|U|872
3CCQ|1|0|G|873
3CCQ|1|0|A|874
3CCQ|1|0|A|875
3CCQ|1|0|A|876
3CCQ|1|0|G|877
3CCQ|1|0|G|878

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain A

50S ribosomal protein L2P