HL_3CCS_061

3D structure

PDB id

3CCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation G2482A

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GCUUGAUGC

Length

9 nucleotides

Bulged bases

3CCS|1|0|C|2443

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3CCS_061 not in the Motif Atlas

Homologous match to HL_4V9F_061

Geometric discrepancy: 0.066

The information below is about HL_4V9F_061

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

27

Unit IDs

3CCS|1|0|G|2442
3CCS|1|0|C|2443
3CCS|1|0|U|2444
3CCS|1|0|U|2445
3CCS|1|0|G|2446
3CCS|1|0|A|2447
3CCS|1|0|U|2448
3CCS|1|0|G|2449
3CCS|1|0|C|2450

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 3

50S ribosomal protein L44E

Chain L

50S ribosomal protein L15P

Chain M

50S ribosomal protein L15e