HL_3CD6_022

3D structure

PDB id

3CD6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-cystal of large Ribosomal Subunit mutant G2616A with CC-Puromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

UUCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3CD6_022 not in the Motif Atlas

Homologous match to HL_4V9F_022

Geometric discrepancy: 0.274

The information below is about HL_4V9F_022

Detailed Annotation

GNRA

Broad Annotation

GNRA

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

3CD6|1|0|U|733
3CD6|1|0|U|734
3CD6|1|0|C|735
3CD6|1|0|A|736
3CD6|1|0|A|737
3CD6|1|0|G|738

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 3

50S ribosomal protein L44E