HL_3CF5_007

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AGAAUU

Length

6 nucleotides

Bulged bases

3CF5|1|X|U|206

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3CF5_007 not in the Motif Atlas

Homologous match to HL_7A0S_007

Geometric discrepancy: 0.2734

The information below is about HL_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91813.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

24

Unit IDs

3CF5|1|X|A|202
3CF5|1|X|G|203
3CF5|1|X|A|204
3CF5|1|X|A|205
3CF5|1|X|U|206
3CF5|1|X|U|207

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains