HL_3CF5_009

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

3CF5|1|X|A|322

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3CF5_009 not in the Motif Atlas

Homologous match to HL_5J7L_142

Geometric discrepancy: 0.13

The information below is about HL_5J7L_142

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

3CF5|1|X|C|316
3CF5|1|X|U|317
3CF5|1|X|G|318
3CF5|1|X|G|319
3CF5|1|X|A|320
3CF5|1|X|A|321
3CF5|1|X|A|322
3CF5|1|X|G|323

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain P

50S RIBOSOMAL PROTEIN L22

Chain R

50S RIBOSOMAL PROTEIN L24