HL_3CF5_011

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUGAGAGUC

Length

9 nucleotides

Bulged bases

3CF5|1|X|G|340

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3CF5_011 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.1644

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.9

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

3CF5|1|X|G|338
3CF5|1|X|U|339
3CF5|1|X|G|340
3CF5|1|X|A|341
3CF5|1|X|G|342
3CF5|1|X|A|343
3CF5|1|X|G|344
3CF5|1|X|U|345
3CF5|1|X|C|346

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain C

50S RIBOSOMAL PROTEIN L4

Chain P

50S RIBOSOMAL PROTEIN L22

Chain R

50S RIBOSOMAL PROTEIN L24