HL_3CF5_012

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUUCGUGAAAC

Length

11 nucleotides

Bulged bases

3CF5|1|X|G|399

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3CF5_012 not in the Motif Atlas

Homologous match to HL_7A0S_013

Geometric discrepancy: 0.1963

The information below is about HL_7A0S_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.8

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

3CF5|1|X|G|395
3CF5|1|X|U|396
3CF5|1|X|U|397
3CF5|1|X|C|398
3CF5|1|X|G|399
3CF5|1|X|U|400
3CF5|1|X|G|401
3CF5|1|X|A|402
3CF5|1|X|A|403
3CF5|1|X|A|404
3CF5|1|X|C|405

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain U

50S RIBOSOMAL PROTEIN L28