HL_3CF5_013

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGACCACC

Length

8 nucleotides

Bulged bases

3CF5|1|X|G|424

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3CF5_013 not in the Motif Atlas

Homologous match to HL_7RQB_014

Geometric discrepancy: 0.1923

The information below is about HL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_96598.1

Basepair signature

cWW

Number of instances in this motif group

15

Unit IDs

3CF5|1|X|G|423
3CF5|1|X|G|424
3CF5|1|X|A|425
3CF5|1|X|C|426
3CF5|1|X|C|427
3CF5|1|X|A|428
3CF5|1|X|C|429
3CF5|1|X|C|430

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains