HL_3CF5_017
3D structure
- PDB id
- 3CF5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UAUUGAAGCA
- Length
- 10 nucleotides
- Bulged bases
- 3CF5|1|X|C|583
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3CF5_017 not in the Motif Atlas
- Geometric match to HL_7A0S_018
- Geometric discrepancy: 0.1294
- The information below is about HL_7A0S_018
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.4
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 137
Unit IDs
3CF5|1|X|U|575
3CF5|1|X|A|576
3CF5|1|X|U|577
3CF5|1|X|U|578
3CF5|1|X|G|579
3CF5|1|X|A|580
3CF5|1|X|A|581
3CF5|1|X|G|582
3CF5|1|X|C|583
3CF5|1|X|A|584
Current chains
- Chain X
- RRNA-23S RIBOSOMAL RNA
Nearby chains
- Chain B
- 50S RIBOSOMAL PROTEIN L3
- Chain I
- 50S RIBOSOMAL PROTEIN L15
- Chain O
- 50S RIBOSOMAL PROTEIN L21
- Chain Y
- 50S RIBOSOMAL PROTEIN L32
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