HL_3CF5_020

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UCCGAAUAGG

Length

10 nucleotides

Bulged bases

3CF5|1|X|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3CF5|1|X|U|650
3CF5|1|X|C|651
3CF5|1|X|C|652
3CF5|1|X|G|653
3CF5|1|X|A|654
3CF5|1|X|A|655
3CF5|1|X|U|656
3CF5|1|X|A|657
3CF5|1|X|G|658
3CF5|1|X|G|659

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain 1

50S RIBOSOMAL PROTEIN L33

Chain 3

50S RIBOSOMAL PROTEIN L35

Chain I

50S RIBOSOMAL PROTEIN L15