HL_3CF5_023

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UGAAAAG

Length

7 nucleotides

Bulged bases

3CF5|1|X|A|794, 3CF5|1|X|A|797

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3CF5_023 not in the Motif Atlas

Homologous match to HL_7A0S_023

Geometric discrepancy: 0.1324

The information below is about HL_7A0S_023

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_91813.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

24

Unit IDs

3CF5|1|X|U|792
3CF5|1|X|G|793
3CF5|1|X|A|794
3CF5|1|X|A|795
3CF5|1|X|A|796
3CF5|1|X|A|797
3CF5|1|X|G|798

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain A

50S RIBOSOMAL PROTEIN L2