HL_3CF5_026

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AGCUAACU

Length

8 nucleotides

Bulged bases

3CF5|1|X|U|969, 3CF5|1|X|C|972

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3CF5_026 not in the Motif Atlas

Homologous match to HL_7A0S_026

Geometric discrepancy: 0.1129

The information below is about HL_7A0S_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

3CF5|1|X|A|966
3CF5|1|X|G|967
3CF5|1|X|C|968
3CF5|1|X|U|969
3CF5|1|X|A|970
3CF5|1|X|A|971
3CF5|1|X|C|972
3CF5|1|X|U|973

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain J

50S RIBOSOMAL PROTEIN L16

Chain Z

5S ribosomal RNA; 5S rRNA