HL_3CF5_027

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3CF5_027 not in the Motif Atlas

Homologous match to HL_7A0S_027

Geometric discrepancy: 0.1921

The information below is about HL_7A0S_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47171.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

3CF5|1|X|G|989
3CF5|1|X|A|990
3CF5|1|X|A|991
3CF5|1|X|A|992
3CF5|1|X|C|993
3CF5|1|X|A|994
3CF5|1|X|A|995
3CF5|1|X|C|996

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain N

50S RIBOSOMAL PROTEIN L20

Chain W

50S RIBOSOMAL PROTEIN L30

Chain Z

5S ribosomal RNA; 5S rRNA