HL_3CF5_034

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3CF5_034 not in the Motif Atlas

Homologous match to HL_7A0S_034

Geometric discrepancy: 0.1689

The information below is about HL_7A0S_034

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

3CF5|1|X|C|1376
3CF5|1|X|G|1377
3CF5|1|X|A|1378
3CF5|1|X|A|1379
3CF5|1|X|C|1380
3CF5|1|X|G|1381

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain 2

50S RIBOSOMAL PROTEIN L34

Chain U

50S RIBOSOMAL PROTEIN L28