HL_3CF5_035

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUCAAGAUUC

Length

10 nucleotides

Bulged bases

3CF5|1|X|U|1409, 3CF5|1|X|U|1410

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3CF5_035 not in the Motif Atlas

Homologous match to HL_7A0S_035

Geometric discrepancy: 0.1042

The information below is about HL_7A0S_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

3CF5|1|X|G|1402
3CF5|1|X|U|1403
3CF5|1|X|C|1404
3CF5|1|X|A|1405
3CF5|1|X|A|1406
3CF5|1|X|G|1407
3CF5|1|X|A|1408
3CF5|1|X|U|1409
3CF5|1|X|U|1410
3CF5|1|X|C|1411

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain Q

50S RIBOSOMAL PROTEIN L23