HL_3CF5_036
3D structure
- PDB id
- 3CF5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CUAUGGCUAUG
- Length
- 11 nucleotides
- Bulged bases
- 3CF5|1|X|U|1475
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3CF5_036 not in the Motif Atlas
- Homologous match to HL_7A0S_036
- Geometric discrepancy: 0.2793
- The information below is about HL_7A0S_036
- Detailed Annotation
- Pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- HL_00824.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
3CF5|1|X|C|1466
3CF5|1|X|U|1467
3CF5|1|X|A|1468
3CF5|1|X|U|1469
3CF5|1|X|G|1470
3CF5|1|X|G|1471
3CF5|1|X|C|1472
3CF5|1|X|U|1473
3CF5|1|X|A|1474
3CF5|1|X|U|1475
3CF5|1|X|G|1476
Current chains
- Chain X
- RRNA-23S RIBOSOMAL RNA
Nearby chains
- Chain K
- 50S RIBOSOMAL PROTEIN L17
Coloring options: