HL_3CF5_046

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAACAG

Length

7 nucleotides

Bulged bases

3CF5|1|X|C|1801

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3CF5_046 not in the Motif Atlas

Homologous match to HL_7A0S_046

Geometric discrepancy: 0.1357

The information below is about HL_7A0S_046

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_93535.3

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

7

Unit IDs

3CF5|1|X|C|1797
3CF5|1|X|G|1798
3CF5|1|X|A|1799
3CF5|1|X|A|1800
3CF5|1|X|C|1801
3CF5|1|X|A|1802
3CF5|1|X|G|1803

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain A

50S RIBOSOMAL PROTEIN L2

Chain U

50S RIBOSOMAL PROTEIN L28