HL_3CF5_048

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

3CF5|1|X|U|1938

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3CF5_048 not in the Motif Atlas

Homologous match to HL_7RQB_049

Geometric discrepancy: 0.1047

The information below is about HL_7RQB_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51824.1

Basepair signature

cWW-F-F-tSH-F-F

Number of instances in this motif group

8

Unit IDs

3CF5|1|X|G|1932
3CF5|1|X|G|1933
3CF5|1|X|U|1934
3CF5|1|X|A|1935
3CF5|1|X|A|1936
3CF5|1|X|G|1937
3CF5|1|X|U|1938
3CF5|1|X|U|1939
3CF5|1|X|C|1940

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain H

50S RIBOSOMAL PROTEIN L14