HL_3CF5_050

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUAAAGAUGC

Length

10 nucleotides

Bulged bases

3CF5|1|X|A|2013, 3CF5|1|X|A|2014, 3CF5|1|X|G|2015

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3CF5_050 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.2412

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

11

Unit IDs

3CF5|1|X|G|2010
3CF5|1|X|U|2011
3CF5|1|X|A|2012
3CF5|1|X|A|2013
3CF5|1|X|A|2014
3CF5|1|X|G|2015
3CF5|1|X|A|2016
3CF5|1|X|U|2017
3CF5|1|X|G|2018
3CF5|1|X|C|2019

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain B

50S RIBOSOMAL PROTEIN L3

Chain Y

50S RIBOSOMAL PROTEIN L32