HL_3CF5_052

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

3CF5|1|X|G|2229

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3CF5_052 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.1077

The information below is about HL_7A0S_052

Detailed Annotation

LSU P loop

Broad Annotation

LSU P loop

Motif group

HL_11974.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

3CF5|1|X|C|2227
3CF5|1|X|U|2228
3CF5|1|X|G|2229
3CF5|1|X|G|2230
3CF5|1|X|G|2231
3CF5|1|X|G|2232
3CF5|1|X|C|2233
3CF5|1|X|G|2234
3CF5|1|X|G|2235

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain J

50S RIBOSOMAL PROTEIN L16

Chain T

50S RIBOSOMAL PROTEIN L27