HL_3CF5_055

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGCAAAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3CF5_055 not in the Motif Atlas

Homologous match to HL_7RQB_056

Geometric discrepancy: 0.1605

The information below is about HL_7RQB_056

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_12078.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

3CF5|1|X|C|2303
3CF5|1|X|G|2304
3CF5|1|X|C|2305
3CF5|1|X|A|2306
3CF5|1|X|A|2307
3CF5|1|X|A|2308
3CF5|1|X|G|2309
3CF5|1|X|G|2310

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain D

50S RIBOSOMAL PROTEIN L5

Chain J

50S RIBOSOMAL PROTEIN L16

Chain T

50S RIBOSOMAL PROTEIN L27