HL_3CF5_066

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UGUUUAUCA

Length

9 nucleotides

Bulged bases

3CF5|1|X|U|2774, 3CF5|1|X|U|2775, 3CF5|1|X|U|2778

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3CF5_066 not in the Motif Atlas

Geometric match to HL_4WF9_011

Geometric discrepancy: 0.1539

The information below is about HL_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.9

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

3CF5|1|X|U|2772
3CF5|1|X|G|2773
3CF5|1|X|U|2774
3CF5|1|X|U|2775
3CF5|1|X|U|2776
3CF5|1|X|A|2777
3CF5|1|X|U|2778
3CF5|1|X|C|2779
3CF5|1|X|A|2780

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain P

50S RIBOSOMAL PROTEIN L22