HL_3CF5_074

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUUGGAAAU

Length

9 nucleotides

Bulged bases

3CF5|1|X|U|2285

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3CF5_074 not in the Motif Atlas

Homologous match to HL_7A0S_076

Geometric discrepancy: 0.5595

The information below is about HL_7A0S_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02452.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

9

Unit IDs

3CF5|1|X|G|2283
3CF5|1|X|U|2284
3CF5|1|X|U|2285
3CF5|1|X|G|2286
3CF5|1|X|G|2287
3CF5|1|X|A|2288
3CF5|1|X|A|2289
3CF5|1|X|A|2290
3CF5|1|X|U|2291

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain D

50S RIBOSOMAL PROTEIN L5