HL_3CMA_056

3D structure

PDB id

3CMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCA and CCA-Phe-Cap-Bio bound to the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAAAAGAUAUCG

Length

13 nucleotides

Bulged bases

3CMA|1|0|A|2302, 3CMA|1|0|C|2309

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3CMA_056 not in the Motif Atlas

Homologous match to HL_4V9F_056

Geometric discrepancy: 0.057

The information below is about HL_4V9F_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

3CMA|1|0|C|2298
3CMA|1|0|G|2299
3CMA|1|0|A|2300
3CMA|1|0|A|2301
3CMA|1|0|A|2302
3CMA|1|0|A|2303
3CMA|1|0|G|2304
3CMA|1|0|A|2305
3CMA|1|0|U|2306
3CMA|1|0|A|2307
3CMA|1|0|U|2308
3CMA|1|0|C|2309
3CMA|1|0|G|2310

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 9

5S ribosomal RNA; 5S rRNA

Chain H

50S ribosomal protein L10e

Chain Q

50S ribosomal protein L21e