HL_3CME_028

3D structure

PDB id

3CME (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structure of CA and CCA-PHE-CAP-BIO Bound to the Large Ribosomal Subunit of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GGUAAGC

Length

7 nucleotides

Bulged bases

3CME|1|0|G|1059

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3CME_028 not in the Motif Atlas

Homologous match to HL_4V9F_028

Geometric discrepancy: 0.0865

The information below is about HL_4V9F_028

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

3CME|1|0|G|1054
3CME|1|0|G|1055
3CME|1|0|U|1056
3CME|1|0|A|1057
3CME|1|0|A|1058
3CME|1|0|G|1059
3CME|1|0|C|1060

Current chains

Chain 0

50S RIBOSOMAL RNA

Nearby chains

Chain H

50S ribosomal protein L10e