HL_3CME_040

3D structure

PDB id

3CME (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structure of CA and CCA-PHE-CAP-BIO Bound to the Large Ribosomal Subunit of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3CME_040 not in the Motif Atlas

Homologous match to HL_4V9F_040

Geometric discrepancy: 0.0926

The information below is about HL_4V9F_040

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

3CME|1|0|G|1628
3CME|1|0|G|1629
3CME|1|0|A|1630
3CME|1|0|A|1631
3CME|1|0|A|1632
3CME|1|0|C|1633

Current chains

Chain 0

50S RIBOSOMAL RNA

Nearby chains

Chain P

50S ribosomal protein L19e