HL_3CPW_075

3D structure

PDB id

3CPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the antibiotic LINEZOLID bound to the large ribosomal subunit of HALOARCULA MARISMORTUI

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

UACCCAUCCCGAACA

Length

15 nucleotides

Bulged bases

3CPW|1|9|C|3040

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3CPW_075 not in the Motif Atlas

Homologous match to HL_4V9F_074

Geometric discrepancy: 0.0498

The information below is about HL_4V9F_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97756.3

Basepair signature

cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F

Number of instances in this motif group

7

Unit IDs

3CPW|1|9|U|3033
3CPW|1|9|A|3034
3CPW|1|9|C|3035
3CPW|1|9|C|3036
3CPW|1|9|C|3037
3CPW|1|9|A|3038
3CPW|1|9|U|3039
3CPW|1|9|C|3040
3CPW|1|9|C|3041
3CPW|1|9|C|3042
3CPW|1|9|G|3043
3CPW|1|9|A|3044
3CPW|1|9|A|3045
3CPW|1|9|C|3046
3CPW|1|9|A|3047

Current chains

Chain 9

5S RIBOSOMAL RNA

Nearby chains

Chain 0

Large subunit ribosomal RNA; LSU rRNA

Chain D

50S ribosomal protein L5P

Chain M

50S ribosomal protein L18P