HL_3CW5_001

3D structure

PDB id

3CW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli Initiator tRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAGCCUGG(H2U)AG

Length

11 nucleotides

Bulged bases

3CW5|1|A|C|16, 3CW5|1|A|G|18, 3CW5|1|A|G|19

QA status

Modified nucleotides: H2U

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3CW5_001 not in the Motif Atlas

Homologous match to HL_6JXM_001

Geometric discrepancy: 0.1892

The information below is about HL_6JXM_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

3CW5|1|A|C|13
3CW5|1|A|A|14
3CW5|1|A|G|15
3CW5|1|A|C|16
3CW5|1|A|C|17
3CW5|1|A|U|17|||A
3CW5|1|A|G|18
3CW5|1|A|G|19
3CW5|1|A|H2U|20
3CW5|1|A|A|21
3CW5|1|A|G|22

Current chains

Chain A

Initiator tRNA

Nearby chains