HL_3CXC_001

3D structure

PDB id

3CXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of an enhanced oxazolidinone inhibitor bound to the 50S ribosomal subunit of H. marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGCCAAGCUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3CXC_001 not in the Motif Atlas

Homologous match to HL_4V9F_001

Geometric discrepancy: 0.0325

The information below is about HL_4V9F_001

Detailed Annotation

Pseudoknot with intercalation

Broad Annotation

No text annotation

Motif group

HL_17803.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

3CXC|1|0|U|55
3CXC|1|0|G|56
3CXC|1|0|C|57
3CXC|1|0|C|58
3CXC|1|0|A|59
3CXC|1|0|A|60
3CXC|1|0|G|61
3CXC|1|0|C|62
3CXC|1|0|U|63
3CXC|1|0|G|64

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 1

RIBOSOMAL PROTEIN L39E

Chain R

RIBOSOMAL PROTEIN L23

Chain U

RIBOSOMAL PROTEIN L29