HL_3CXC_014

3D structure

PDB id

3CXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of an enhanced oxazolidinone inhibitor bound to the 50S ribosomal subunit of H. marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGCAUCGAC

Length

9 nucleotides

Bulged bases

3CXC|1|0|G|417

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3CXC_014 not in the Motif Atlas

Homologous match to HL_4V9F_014

Geometric discrepancy: 0.0574

The information below is about HL_4V9F_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

29

Unit IDs

3CXC|1|0|G|416
3CXC|1|0|G|417
3CXC|1|0|C|418
3CXC|1|0|A|419
3CXC|1|0|U|420
3CXC|1|0|C|421
3CXC|1|0|G|422
3CXC|1|0|A|423
3CXC|1|0|C|424

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 2

RIBOSOMAL PROTEIN L44E

Chain K

RIBOSOMAL PROTEIN L15

Chain L

RIBOSOMAL PROTEIN L15E