HL_3CXC_048

3D structure

PDB id

3CXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of an enhanced oxazolidinone inhibitor bound to the 50S ribosomal subunit of H. marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3CXC_048 not in the Motif Atlas

Homologous match to HL_4V9F_048

Geometric discrepancy: 0.0517

The information below is about HL_4V9F_048

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

3CXC|1|0|C|1862
3CXC|1|0|G|1863
3CXC|1|0|C|1864
3CXC|1|0|A|1865
3CXC|1|0|A|1866
3CXC|1|0|G|1867

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain A

RIBOSOMAL PROTEIN L2

Chain L

RIBOSOMAL PROTEIN L15E