HL_3CXC_052

3D structure

PDB id

3CXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of an enhanced oxazolidinone inhibitor bound to the 50S ribosomal subunit of H. marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUGCGGAGUC

Length

10 nucleotides

Bulged bases

3CXC|1|0|C|2071, 3CXC|1|0|G|2072, 3CXC|1|0|G|2073

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3CXC_052 not in the Motif Atlas

Homologous match to HL_4V9F_052

Geometric discrepancy: 0.0414

The information below is about HL_4V9F_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

10

Unit IDs

3CXC|1|0|G|2068
3CXC|1|0|U|2069
3CXC|1|0|G|2070
3CXC|1|0|C|2071
3CXC|1|0|G|2072
3CXC|1|0|G|2073
3CXC|1|0|A|2074
3CXC|1|0|G|2075
3CXC|1|0|U|2076
3CXC|1|0|C|2077

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain B

RIBOSOMAL PROTEIN L3

Chain X

RIBOSOMAL PROTEIN L32E