HL_3CXC_060

3D structure

PDB id

3CXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of an enhanced oxazolidinone inhibitor bound to the 50S ribosomal subunit of H. marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3CXC_060 not in the Motif Atlas

Homologous match to HL_4V9F_060

Geometric discrepancy: 0.0592

The information below is about HL_4V9F_060

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

3CXC|1|0|C|2411
3CXC|1|0|G|2412
3CXC|1|0|A|2413
3CXC|1|0|A|2414
3CXC|1|0|A|2415
3CXC|1|0|G|2416

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain M

RIBOSOMAL PROTEIN L18

Chain P

RIBOSOMAL PROTEIN L21E